A command line client for the QIAGEN CLC Genomics Server.
QIAGEN CLC Server Command Line Tools provides a command line client for the QIAGEN CLC Genomics Server. This client software can be used to launch bioinformatics analyses including workflows, import and export data, and carry out utility operations such as moving, renaming, and deleting data. Commands can be run directly or included in scripts.
| Publisher | QIAGEN Aarhus A/S |
|---|---|
| Version | 26.0.6 |
| Release date | 2026-09-09 |
| License | Proprietary |
| Installer type | exe |
| Architecture | x64 |
| Package ID | QIAGEN.CLCServerCommandLineTools |
| Install scope | All users |
winget install --id=QIAGEN.CLCServerCommandLineTools -ewinget upgrade --id=QIAGEN.CLCServerCommandLineTools -ewinget uninstall --id=QIAGEN.CLCServerCommandLineTools -e"CLCServerCommandLineTools_26_0_6.exe" -q -Dinstall4j.suppressUnattendedReboot=true"CLCServerCommandLineTools_26_0_6.exe" -dir "D:\Apps\CLC Server Command Line Tools"CLC Server Command Line Tools is proprietary software from QIAGEN Aarhus A/S. Check the publisher's license terms for pricing and usage rights.
The latest version is 26.0.6, released on Sep 9, 2026.
The download button links to the official installer published on download.clcbio.com, the same file Windows Package Manager installs. You can verify the downloaded file by comparing its SHA-256 checksum with 60fb47a1ab266ddcd65245d578a0badf05b3af49ff4be643e8be7f3fb8ae869d.
CLC Server Command Line Tools runs on Windows and is available for 64-bit (x64) systems.
Run the offline installer with "CLCServerCommandLineTools_26_0_6.exe" -q -Dinstall4j.suppressUnattendedReboot=true, or install it with Windows Package Manager: winget install --id=QIAGEN.CLCServerCommandLineTools -e --silent.
Open Settings › Apps › Installed apps, find CLC Server Command Line Tools and select Uninstall. From the command line, run winget uninstall --id=QIAGEN.CLCServerCommandLineTools -e.
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